Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3418PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (329 aa)    
Predicted Functional Partners:
Swit_3417
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
   
 0.930
Swit_3412
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; Belongs to the UPF0255 family.
 
     0.929
Swit_3414
PFAM: cyclase family protein.
 
     0.918
Swit_3416
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
 
  
 0.821
Swit_3413
Vanillate monooxygenase; PFAM: Rieske [2Fe-2S] domain protein.
 
  
 0.779
Swit_3419
PFAM: TonB-dependent receptor.
       0.773
Swit_3415
PFAM: protein of unknown function DUF849.
       0.768
Swit_1684
PFAM: monooxygenase, FAD-binding.
 
   
 0.755
Swit_0739
Hypothetical protein.
  
     0.680
Swit_4185
Hypothetical protein.
  
     0.672
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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