Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3470PFAM: ErfK/YbiS/YcfS/YnhG family protein. (330 aa)    
Predicted Functional Partners:
Swit_3471
Hypothetical protein.
 
     0.606
Swit_0483
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Belongs to the peptidase S11 family.
  
 
 0.560
Swit_3472
PFAM: helix-turn-helix domain protein; protein of unknown function DUF955.
       0.553
Swit_3469
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein.
     
 0.520
Swit_4717
PFAM: ribonuclease T2; Belongs to the RNase T2 family.
  
     0.501
Swit_2334
PFAM: protein of unknown function DUF1328.
 
     0.462
Swit_3748
TIGRFAM: TonB family protein.
 
    0.453
Swit_4815
PFAM: O-antigen polymerase.
 
  
 0.440
Swit_3002
PFAM: protein of unknown function DUF1467.
 
     0.433
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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