Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3496Hypothetical protein. (701 aa)    
Predicted Functional Partners:
Swit_3497
Hypothetical protein.
       0.584
Swit_3495
Hypothetical protein.
       0.556
Swit_3365
PFAM: NAD-dependent epimerase/dehydratase.
 
    0.468
Swit_3016
Hypothetical protein.
  
     0.451
Swit_3459
Hypothetical protein.
  
 
 0.428
Swit_3769
PFAM: NAD-dependent epimerase/dehydratase.
 
    0.428
Swit_3805
PFAM: lipolytic enzyme, G-D-S-L family.
  
 
 0.428
Swit_4695
PFAM: lipolytic enzyme, G-D-S-L family.
  
 
 0.428
Swit_1956
Hypothetical protein.
  
     0.423
Swit_1160
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.407
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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