Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3501PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit. (186 aa)    
Predicted Functional Partners:
Swit_3500
PFAM: peptidase A24A, prepilin type IV.
       0.693
Swit_3561
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.592
Swit_3225
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
  
 0.521
Swit_4025
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
  
 0.521
Swit_3502
PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein, ShlB-type.
  
  
 0.520
Swit_3560
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.494
Swit_1821
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.463
Swit_1066
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
  
 0.408
Swit_2033
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
  
 0.408
Swit_3263
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
  
 0.408
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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