Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_3502PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein, ShlB-type. (553 aa)    
Predicted Functional Partners:
Swit_3190
PFAM: Polypeptide-transport-associated domain protein, ShlB-type.
  
  
 
0.671
Swit_3501
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit.
  
  
 0.520
Swit_1712
PFAM: cysteine dioxygenase type I.
 
     0.461
Swit_3500
PFAM: peptidase A24A, prepilin type IV.
       0.433
Swit_3191
TIGRFAM: filamentous haemagglutinin family outer membrane protein.
 
 
 0.432
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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