STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3514PFAM: type II and III secretion system protein; Belongs to the bacterial secretin family. (431 aa)    
Predicted Functional Partners:
Swit_3515
Flp pilus assembly protein CpaB-like protein.
 
  
 0.980
Swit_3510
PFAM: type II secretion system protein.
 
  
 0.974
Swit_3511
PFAM: type II secretion system protein.
 
  
 0.972
Swit_3512
PFAM: type II secretion system protein E.
  
 0.972
Swit_3513
Response regulator receiver protein.
 
  
 0.969
Swit_3507
Membrane-like protein.
 
  
 0.921
Swit_3509
PFAM: Tetratricopeptide TPR_4.
 
  
 0.903
Swit_4869
PFAM: SAF domain.
 
  
 0.895
Swit_4864
PFAM: type II secretion system protein.
 
  
 0.856
Swit_0628
PFAM: type II secretion system protein E.
  
 0.846
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.