STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3519PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (496 aa)    
Predicted Functional Partners:
Swit_3524
Aminocarboxymuconate-semialdehyde decarboxylase; PFAM: amidohydrolase 2.
 
 
 0.988
Swit_3522
PFAM: Endoribonuclease L-PSP.
 
 0.987
Swit_2308
PFAM: amidohydrolase 2.
 
 
 0.941
Swit_1683
PFAM: amidohydrolase 2.
 
 
 0.940
Swit_1753
PFAM: amidohydrolase 2.
 
 
 0.940
Swit_2313
PFAM: amidohydrolase 2.
 
 
 0.936
Swit_1538
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.918
Swit_3818
PFAM: 4-oxalocrotonate tautomerase.
    
 0.908
Swit_3019
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
    
 0.905
nbaC
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate.
 
   
 0.878
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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