STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3532TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1. (500 aa)    
Predicted Functional Partners:
Swit_4053
PFAM: secretion protein HlyD family protein.
 
 
 0.883
Swit_1144
PFAM: secretion protein HlyD family protein.
 
 
 0.881
Swit_3230
PFAM: secretion protein HlyD family protein.
 
 
 0.881
Swit_4511
PFAM: secretion protein HlyD family protein.
 
 
 0.878
Swit_0452
PFAM: secretion protein HlyD family protein.
 
 
 0.872
Swit_3168
PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.683
Swit_3533
Magnesium transporter; Acts as a magnesium transporter.
  
  
 0.575
Swit_3531
Peptidyl-prolyl cis-trans isomerase, cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
  
 0.530
Swit_3534
PFAM: uncharacterised conserved protein UCP032025.
       0.499
Swit_3705
PFAM: secretion protein HlyD family protein.
 
 
 0.456
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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