Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_3535PFAM: Tetratricopeptide TPR_4. (934 aa)    
Predicted Functional Partners:
Swit_3098
PFAM: Ankyrin.
 
 0.686
Swit_1494
SMART: nuclear protein SET.
 
 0.644
Swit_4040
PFAM: peptidylprolyl isomerase, FKBP-type.
  
 
 0.615
Swit_4878
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein.
  
 0.598
Swit_0794
PFAM: Tetratricopeptide TPR_4.
  
 0.595
Swit_3608
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
  
 0.589
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
  
    0.588
Swit_3915
PFAM: histone deacetylase superfamily.
 
 
 0.586
Swit_0062
PFAM: Mov34/MPN/PAD-1 family protein.
 
 
  0.585
Swit_0771
Molecular chaperone-like protein.
  
 0.585
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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