Swit_3539 protein (Sphingomonas wittichii) - STRING interaction network

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Swit_3539

PFAM: RNA-binding S4 domain protein. (93 aa)

Predicted Functional Partners:

Swit_3540

0.892

rplS

0.890

rplQ

0.853

rpmB

0.851

rpmJ

0.849

rpmA

0.840

rpmH

0.837

rplT

0.836

rplB

0.835

rplU

0.830

Your Current Organism:

Sphingomonas wittichii

NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Swit_3539	Swit_3540	Swit_3539	Swit_3540	PFAM: RNA-binding S4 domain protein.	PFAM: helicase domain protein.	0.892
Swit_3539	rplB	Swit_3539	Swit_1350	PFAM: RNA-binding S4 domain protein.	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.835
Swit_3539	rplQ	Swit_3539	Swit_1325	PFAM: RNA-binding S4 domain protein.	PFAM: ribosomal protein L17.	0.853
Swit_3539	rplS	Swit_3539	Swit_2663	PFAM: RNA-binding S4 domain protein.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.890
Swit_3539	rplT	Swit_3539	Swit_2431	PFAM: RNA-binding S4 domain protein.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.836
Swit_3539	rplU	Swit_3539	Swit_3891	PFAM: RNA-binding S4 domain protein.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.830
Swit_3539	rpmA	Swit_3539	Swit_3892	PFAM: RNA-binding S4 domain protein.	PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.840
Swit_3539	rpmB	Swit_3539	Swit_2326	PFAM: RNA-binding S4 domain protein.	PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.851
Swit_3539	rpmH	Swit_3539	Swit_3614	PFAM: RNA-binding S4 domain protein.	PFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.837
Swit_3539	rpmJ	Swit_3539	Swit_3115	PFAM: RNA-binding S4 domain protein.	TIGRFAM: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.849
Swit_3540	Swit_3539	Swit_3540	Swit_3539	PFAM: helicase domain protein.	PFAM: RNA-binding S4 domain protein.	0.892
rplB	Swit_3539	Swit_1350	Swit_3539	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	PFAM: RNA-binding S4 domain protein.	0.835
rplB	rplQ	Swit_1350	Swit_1325	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	PFAM: ribosomal protein L17.	0.996
rplB	rplS	Swit_1350	Swit_2663	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.993
rplB	rplT	Swit_1350	Swit_2431	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.994
rplB	rplU	Swit_1350	Swit_3891	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplB	rpmA	Swit_1350	Swit_3892	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.986
rplB	rpmB	Swit_1350	Swit_2326	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.971
rplB	rpmH	Swit_1350	Swit_3614	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	PFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.888
rplB	rpmJ	Swit_1350	Swit_3115	LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	TIGRFAM: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.988

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