STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3545PFAM: protein of unknown function DUF87. (544 aa)    
Predicted Functional Partners:
Swit_3546
Hypothetical protein.
 
     0.837
Swit_3547
PFAM: protein of unknown function DUF81.
 
     0.806
Swit_0855
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
 
     0.657
Swit_3002
PFAM: protein of unknown function DUF1467.
  
     0.614
Swit_2398
Hypothetical protein.
 
    0.494
Swit_0884
Hypothetical protein.
 
  
 0.485
Swit_2693
Hypothetical protein.
  
     0.478
Swit_3207
Hypothetical protein.
 
     0.466
Swit_3200
TIGRFAM: lycopene cyclase; lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase.
 
     0.464
Swit_0010
Hypothetical protein.
  
     0.457
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.