Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_3546Hypothetical protein. (253 aa)    
Predicted Functional Partners:
Swit_3547
PFAM: protein of unknown function DUF81.
 
     0.969
Swit_3545
PFAM: protein of unknown function DUF87.
 
     0.837
Swit_1368
PFAM: UspA domain protein.
 
     0.807
Swit_4648
Hypothetical protein.
 
     0.639
Swit_4470
PFAM: protein of unknown function DUF526.
  
     0.619
Swit_3548
ICC-like protein phosphoesterase-like protein.
 
     0.613
Swit_4052
PFAM: uncharacterised conserved protein UCP032146; Belongs to the UPF0262 family.
  
     0.612
Swit_1930
Conserved hypothetical protein.
 
     0.603
Swit_0855
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
  
     0.595
Swit_4600
Uncharacterized protein; Related to arylsulfate sulfotransferase.
  
     0.583
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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