STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3548ICC-like protein phosphoesterase-like protein. (220 aa)    
Predicted Functional Partners:
Swit_2792
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like.
 
    0.841
Swit_3978
Exonuclease of the beta-lactamase fold involved in RNA processing-like protein.
 
     0.808
Swit_3979
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase.
 
     0.808
Swit_2823
PFAM: protein of unknown function DUF1052.
  
     0.653
Swit_3546
Hypothetical protein.
 
     0.613
Swit_3549
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein.
       0.581
Swit_3547
PFAM: protein of unknown function DUF81.
       0.545
Swit_3534
PFAM: uncharacterised conserved protein UCP032025.
  
     0.490
Swit_1120
Nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein.
  
     0.446
Swit_3545
PFAM: protein of unknown function DUF87.
       0.419
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.