Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lysSTIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family. (583 aa)    
Predicted Functional Partners:
Swit_0020
PFAM: protein of unknown function DUF1013.
  
    0.798
Swit_3565
SMART: helicase c2.
       0.747
Swit_2716
PFAM: protein of unknown function DUF1321.
  
     0.704
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.672
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
  
 0.589
Swit_2681
TIGRFAM: Double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.581
Swit_3830
PFAM: import inner membrane translocase, subunit Tim44.
  
     0.574
Swit_0036
ATPase involved in DNA replication initiation; Belongs to the DnaA family.
 
   
 0.570
atpF
H+-transporting two-sector ATPase, B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
 
    0.568
Swit_4580
PFAM: GcrA cell cycle regulator.
  
    0.559
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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