Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_3572Hpr(Ser) kinase/phosphatase. (288 aa)    
Predicted Functional Partners:
Swit_3571
Hypothetical protein.
 
     0.967
Swit_3573
Hypothetical protein.
       0.870
Swit_3574
Hypothetical protein.
       0.836
Swit_4037
Hypothetical protein.
 
    0.786
Swit_4032
TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: lipopolysaccharide biosynthesis protein.
 
     0.771
Swit_3570
Aminodeoxychorismate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein.
       0.770
Swit_4820
PFAM: O-antigen polymerase.
 
     0.765
Swit_4038
PFAM: glycosyl transferase, group 1.
 
     0.763
Swit_4028
Hypothetical protein.
 
   
 0.759
Swit_4036
TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: polysaccharide deacetylase.
 
   
 0.759
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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