Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3580PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (835 aa)    
Predicted Functional Partners:
Swit_3581
Hypothetical protein.
 
     0.740
Swit_4696
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.739
Swit_4625
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.738
Swit_1484
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.732
Swit_3582
PFAM: peptidase M19, renal dipeptidase.
 
     0.673
Swit_3583
PFAM: FAD dependent oxidoreductase.
  
    0.649
Swit_0709
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.635
Swit_3758
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.627
Swit_3857
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.627
Swit_1063
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.617
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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