Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3584Hypothetical protein. (110 aa)    
Predicted Functional Partners:
Swit_3585
Serine O-acetyltransferase.
       0.870
Swit_0002
NifU-like involved in Fe-S cluster formation.
  
     0.768
Swit_4580
PFAM: GcrA cell cycle regulator.
  
     0.753
Swit_2905
PFAM: OstA family protein.
  
     0.733
Swit_4750
PFAM: protein of unknown function DUF1153.
  
     0.684
Swit_3890
TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region.
 
     0.671
Swit_4710
PFAM: protein of unknown function DUF1476.
  
     0.659
Swit_4717
PFAM: ribonuclease T2; Belongs to the RNase T2 family.
  
     0.626
ahpD
Alkylhydroperoxidase, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.609
Swit_2931
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
 
     0.601
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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