STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3691TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E. (328 aa)    
Predicted Functional Partners:
Swit_3694
SMART: AAA ATPase.
 
   
 0.947
Swit_3692
PFAM: Conjugal transfer protein TrbC.
 
   
 0.941
Swit_3693
PFAM: type IV secretory pathway, VirB3 family protein.
 
   
 0.940
Swit_3699
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.
 
   
 0.933
Swit_3700
PFAM: conjugation TrbI family protein.
 
   
 0.932
Swit_3695
TIGRFAM: P-type conjugative transfer protein TrbJ.
 
   
 0.930
Swit_3698
PFAM: Conjugal transfer protein.
 
   
 0.929
Swit_3697
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.925
Swit_3511
PFAM: type II secretion system protein.
 
  
 0.864
Swit_3689
PFAM: TRAG family protein.
   
 0.862
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.