Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3700PFAM: conjugation TrbI family protein. (405 aa)    
Predicted Functional Partners:
Swit_3699
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.
 
 
 0.996
Swit_3694
SMART: AAA ATPase.
 
 
 0.993
Swit_0169
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.
 
 
 0.976
Swit_0164
SMART: AAA ATPase.
 
 
 0.974
Swit_3698
PFAM: Conjugal transfer protein.
 
   
 0.970
Swit_3695
TIGRFAM: P-type conjugative transfer protein TrbJ.
 
 
 
 0.964
Swit_3697
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.957
Swit_3692
PFAM: Conjugal transfer protein TrbC.
 
   
 0.951
Swit_3693
PFAM: type IV secretory pathway, VirB3 family protein.
 
   
 0.950
Swit_3701
Uncharacterized conserved small-like protein.
 
   
 0.948
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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