STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3728Hypothetical protein. (254 aa)    
Predicted Functional Partners:
Swit_3727
Hypothetical protein.
       0.773
Swit_3724
TIGRFAM: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.762
Swit_3725
PFAM: acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.762
Swit_3726
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR.
       0.762
Swit_3723
PFAM: Rhodanese domain protein.
       0.679
Swit_3722
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.492
Swit_3721
Hypothetical protein.
       0.456
Swit_3720
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
       0.447
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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