STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3746PFAM: Methyltransferase type 11; Methyltransferase type 12. (286 aa)    
Predicted Functional Partners:
Swit_3744
PFAM: beta-lactamase domain protein.
  
  
 0.697
Swit_3745
PFAM: protein of unknown function DUF81.
  
    0.689
Swit_3747
Hypothetical protein.
       0.682
Swit_3743
1-Cys peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
     
 0.517
Swit_2030
Hypothetical protein.
 
  
 0.469
Swit_2020
PFAM: cytochrome P450.
 
 
 
 0.452
Swit_2273
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
 
 
 
 0.444
Swit_1645
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12.
  
     0.443
Swit_3095
Hypothetical protein.
 
     0.437
Swit_3742
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain.
   
 
 0.437
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.