Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Swit_3746PFAM: Methyltransferase type 11; Methyltransferase type 12. (286 aa)    
Predicted Functional Partners:
Swit_3744
PFAM: beta-lactamase domain protein.
  
  
 0.697
Swit_3747
Hypothetical protein.
       0.682
Swit_3745
PFAM: protein of unknown function DUF81.
  
    0.679
Swit_3743
1-Cys peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
     
 0.505
Swit_2030
Hypothetical protein.
 
  
 0.461
Swit_1645
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12.
  
     0.443
Swit_3095
Hypothetical protein.
  
     0.437
Swit_2274
Uncharacterized protein.
  
     0.428
Swit_2273
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR.
 
 
 
 0.419
Swit_3742
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain.
   
 
 0.418
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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