STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3755Ketosteroid isomerase-like protein. (137 aa)    
Predicted Functional Partners:
Swit_3756
Hypothetical protein.
       0.782
Swit_3757
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
       0.776
Swit_3754
PFAM: amino acid permease-associated region.
       0.508
Swit_3758
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.479
Swit_3753
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.461
Swit_3759
PFAM: amidohydrolase; Amidohydrolase 3.
       0.444
Swit_3760
PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein.
       0.432
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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