Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_3765PFAM: FAD linked oxidase domain protein. (495 aa)    
Predicted Functional Partners:
Swit_3764
PFAM: cytochrome c, class I; protein of unknown function DUF1486.
 
   
 0.684
Swit_1474
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
   
 0.511
Swit_2988
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 0.511
Swit_3766
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
    0.501
Swit_1438
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
 
  
 0.487
Swit_1643
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.486
Swit_4230
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.486
Swit_4248
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.486
Swit_4251
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.486
Swit_4638
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.486
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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