Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Swit_3775PFAM: Rhodanese domain protein. (288 aa)    
Predicted Functional Partners:
Swit_3776
TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes.
 
 
 0.989
Swit_4058
PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
    
 0.945
Swit_0051
Cysteine desulfurase; PFAM: aminotransferase, class V.
  
 0.937
Swit_0052
PFAM: aminotransferase, class V.
  
 0.937
Swit_4056
Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite.
    
 0.928
Swit_2626
TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes.
 
 
 0.926
Swit_4603
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein.
    
 0.920
Swit_3551
PFAM: aminotransferase, class I and II.
     
 0.904
Swit_4172
PFAM: aminotransferase, class I and II.
     
 0.904
Swit_2509
Alkanesulfonate monooxygenase; PFAM: luciferase family protein.
    
 0.901
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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