STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3852PFAM: extracellular solute-binding protein, family 5. (495 aa)    
Predicted Functional Partners:
Swit_3781
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.995
Swit_3780
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.991
Swit_3853
4-phytase; PFAM: extracellular solute-binding protein, family 5.
 
 
0.988
Swit_3851
Hypothetical protein.
       0.745
Swit_3236
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
    0.646
Swit_2632
Hypothetical protein.
  
 
 0.623
Swit_3779
PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
 0.599
Swit_3854
PFAM: protein of unknown function DUF885.
       0.549
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.459
Swit_0265
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase.
  
  
 0.454
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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