Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swit_3906PFAM: permease YjgP/YjgQ family protein. (364 aa)    
Predicted Functional Partners:
Swit_3905
PFAM: permease YjgP/YjgQ family protein.
 
 0.999
Swit_2906
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.993
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.779
Swit_3903
PFAM: diacylglycerol kinase, catalytic region.
 
     0.773
Swit_3908
Hypothetical protein.
 
     0.768
Swit_3907
PFAM: fatty acid hydroxylase.
       0.741
Swit_2745
ABC-type uncharacterized transport system auxiliary component-like protein.
  
     0.707
Swit_3902
Hypothetical protein.
 
     0.674
Swit_2742
PFAM: protein of unknown function DUF140.
 
 
 0.666
Swit_3904
Hypothetical protein.
       0.654
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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