STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3907PFAM: fatty acid hydroxylase. (276 aa)    
Predicted Functional Partners:
Swit_3908
Hypothetical protein.
 
     0.912
Swit_3903
PFAM: diacylglycerol kinase, catalytic region.
 
 
 
 0.867
Swit_3905
PFAM: permease YjgP/YjgQ family protein.
 
     0.791
Swit_3902
Hypothetical protein.
 
     0.764
Swit_1227
Hypothetical protein.
  
 
 0.757
Swit_3906
PFAM: permease YjgP/YjgQ family protein.
       0.752
Swit_2559
PFAM: AMP-dependent synthetase and ligase.
 
   
 0.710
Swit_3909
PFAM: Lysine exporter protein (LYSE/YGGA).
       0.622
Swit_1806
Hypothetical protein.
  
     0.615
Swit_3910
PFAM: protein of unknown function DUF1244.
       0.611
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.