Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3908Hypothetical protein. (382 aa)    
Predicted Functional Partners:
Swit_3907
PFAM: fatty acid hydroxylase.
 
     0.923
Swit_2559
PFAM: AMP-dependent synthetase and ligase.
 
   
 0.895
Swit_3897
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR.
 
  
 0.894
Swit_3902
Hypothetical protein.
 
     0.872
Swit_3899
Hypothetical protein.
 
   
 0.857
Swit_3905
PFAM: permease YjgP/YjgQ family protein.
 
     0.857
Swit_3900
Serine palmitoyltransferase; PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aminotransferase, class I and II.
 
   
 0.851
Swit_3903
PFAM: diacylglycerol kinase, catalytic region.
 
     0.791
Swit_3906
PFAM: permease YjgP/YjgQ family protein.
 
     0.768
Swit_2497
PFAM: Nucleotidyl transferase.
 
  
 0.759
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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