Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3963PFAM: Phytanoyl-CoA dioxygenase. (341 aa)    
Predicted Functional Partners:
Swit_3964
PFAM: acylneuraminate cytidylyltransferase.
       0.808
Swit_3965
TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.765
Swit_2453
PFAM: Capsule polysaccharide biosynthesis protein.
 
     0.684
Swit_0026
Hypothetical protein.
  
     0.679
Swit_3799
Hypothetical protein.
 
     0.675
Swit_2454
PFAM: Capsule polysaccharide biosynthesis protein.
 
     0.674
Swit_3961
PFAM: YbaK/prolyl-tRNA synthetase associated region.
       0.646
Swit_3962
Hypothetical protein.
       0.646
Swit_3662
Hypothetical protein.
  
     0.607
Swit_1934
Hypothetical protein.
  
     0.598
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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