Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_3975Hypothetical protein. (205 aa)    
Predicted Functional Partners:
Swit_3976
PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
    0.935
Swit_3977
PFAM: ferredoxin; [2Fe-2S]-binding domain protein.
 
     0.895
Swit_3978
Exonuclease of the beta-lactamase fold involved in RNA processing-like protein.
       0.580
Swit_3979
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase.
 
     0.518
Swit_4597
Isoquinoline 1-oxidoreductase; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
    0.452
Swit_4149
Hypothetical protein.
  
     0.408
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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