STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4002PFAM: peptidase M23B. (328 aa)    
Predicted Functional Partners:
Swit_4001
PFAM: glycosyl transferase, family 2.
  
  
 0.782
Swit_4000
Uncharacterized protein.
       0.770
Swit_4003
PFAM: glycosyl transferase, group 1.
     
 0.640
Swit_0639
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B.
 
   
 0.611
Swit_3999
Hypothetical protein.
       0.544
Swit_3804
PFAM: peptidase M23B.
  
   
 0.483
Swit_3998
PFAM: Methyltransferase type 11; Methyltransferase type 12.
       0.441
Swit_3012
PFAM: protein of unknown function DUF214.
 
  
 0.418
Swit_0221
Uncharacterized protein.
  
     0.414
Swit_0874
PFAM: protein of unknown function DUF1006.
 
    0.404
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.