Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_4029PFAM: AMP-dependent synthetase and ligase. (509 aa)    
Predicted Functional Partners:
Swit_4030
PFAM: Orn/DAP/Arg decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
  
 0.966
Swit_4028
Hypothetical protein.
 
 
 0.958
Swit_2559
PFAM: AMP-dependent synthetase and ligase.
 
    
0.904
Swit_4031
PFAM: polysaccharide export protein.
 
     0.856
Swit_4038
PFAM: glycosyl transferase, group 1.
 
   
 0.842
Swit_4036
TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: polysaccharide deacetylase.
 
     0.837
Swit_4039
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase.
 
  
 0.837
Swit_4032
TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; PFAM: lipopolysaccharide biosynthesis protein.
 
     0.820
Swit_4037
Hypothetical protein.
 
     0.815
Swit_4033
ATPase involved in chromosome partitioning-like protein.
 
   
 0.774
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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