Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4052PFAM: uncharacterised conserved protein UCP032146; Belongs to the UPF0262 family. (183 aa)    
Predicted Functional Partners:
Swit_4051
PFAM: CMP/dCMP deaminase, zinc-binding.
       0.868
Swit_4055
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
       0.723
Swit_3012
PFAM: protein of unknown function DUF214.
  
     0.719
dcd
dCTP deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.717
Swit_4054
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
       0.709
Swit_4710
PFAM: protein of unknown function DUF1476.
  
     0.701
Swit_4053
PFAM: secretion protein HlyD family protein.
       0.689
Swit_0544
PFAM: protein of unknown function DUF983.
 
   
 0.675
Swit_1368
PFAM: UspA domain protein.
  
     0.670
Swit_4470
PFAM: protein of unknown function DUF526.
  
     0.635
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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