Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_4078Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR. (175 aa)    
Predicted Functional Partners:
Swit_4077
PFAM: glutathione peroxidase; Belongs to the glutathione peroxidase family.
  
  
 0.767
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
 
     0.678
Swit_3593
TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein.
 
     0.497
Swit_1368
PFAM: UspA domain protein.
 
  
 0.466
Swit_4648
Hypothetical protein.
  
     0.444
Swit_2600
PFAM: protein of unknown function DUF710.
 
  
 0.439
Swit_2548
Disulfide bond formation protein DsbB-like protein.
 
     0.434
Swit_0786
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system.
  
  
 0.428
Swit_3790
Uncharacterized protein.
  
   
 0.425
Swit_4722
PFAM: Glutathione S-transferase, N-terminal domain.
 
   
 0.423
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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