STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4083PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein. (517 aa)    
Predicted Functional Partners:
Swit_4084
PFAM: protein of unknown function DUF917.
    0.993
Swit_4195
PFAM: protein of unknown function DUF917.
    0.978
Swit_4082
PFAM: regulatory protein, LuxR.
       0.514
Swit_4081
PFAM: amidohydrolase; Amidohydrolase 3.
       0.489
Swit_1718
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase.
 
 0.478
Swit_4085
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.449
Swit_0476
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase.
 
 
 0.404
Swit_2036
PFAM: Hydantoinase B/oxoprolinase.
  
 
 0.404
Swit_2084
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase.
 
 
 0.404
Swit_3074
PFAM: Hydantoinase B/oxoprolinase.
  
 
 0.404
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.