Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4085PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (685 aa)    
Predicted Functional Partners:
Swit_0907
Hypothetical protein.
  
     0.764
Swit_3032
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.736
Swit_1596
Outer membrane receptor protein mostly Fe transport-like protein.
  
     0.726
Swit_3561
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.683
Swit_3766
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.671
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.635
Swit_4318
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.625
Swit_2291
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
   
 0.599
Swit_4086
PFAM: major facilitator superfamily MFS_1.
       0.586
Swit_1191
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.552
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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