STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4094PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (142 aa)    
Predicted Functional Partners:
Swit_4708
PFAM: beta-lactamase domain protein.
  
 
 0.550
Swit_4095
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.538
Swit_3235
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.476
Swit_4096
PFAM: Hemerythrin HHE cation binding domain protein.
 
    0.424
Swit_4263
Gentisate 1 2-dioxygenase-like protein.
  
   
 0.417
Swit_1472
Formate dehydrogenase delta subunit.
  
   
 0.413
Swit_3192
PFAM: Tetratricopeptide TPR_2 repeat protein.
  
     0.410
Swit_3643
PFAM: beta-lactamase domain protein.
  
 
 0.406
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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