Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_4124PFAM: monooxygenase, FAD-binding. (559 aa)    
Predicted Functional Partners:
Swit_4126
PFAM: alpha/beta hydrolase fold.
 
 0.721
Swit_4123
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
 
  
 0.692
Swit_0775
PFAM: beta-lactamase domain protein.
 
  
 0.608
Swit_1438
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
  
   
 0.572
Swit_1907
Hypothetical protein.
  
 0.564
Swit_2449
TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein.
   
 0.564
Swit_1008
PFAM: alpha/beta hydrolase fold.
  
 0.560
Swit_1187
PFAM: Methyltransferase type 12.
  
 0.559
Swit_4011
PFAM: Methyltransferase type 11; Methyltransferase type 12.
  
 0.559
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
  
 0.559
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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