STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4124PFAM: monooxygenase, FAD-binding. (559 aa)    
Predicted Functional Partners:
Swit_4123
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
 
  
 0.685
Swit_4126
PFAM: alpha/beta hydrolase fold.
 
  
 0.657
Swit_0775
PFAM: beta-lactamase domain protein.
 
  
 0.602
Swit_1438
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
  
   
 0.576
Swit_0456
PFAM: monooxygenase, FAD-binding; tryptophan halogenase.
  
   
 0.546
Swit_3061
PFAM: monooxygenase, FAD-binding.
  
   
 0.539
Swit_4122
Hypothetical protein.
 
   
 0.537
Swit_1561
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase.
  
   
 0.534
Swit_4125
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
       0.529
Swit_2030
Hypothetical protein.
  
 
 0.497
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.