STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4145PFAM: TonB-dependent receptor; TonB-dependent receptor, plug. (737 aa)    
Predicted Functional Partners:
Swit_4146
PFAM: isochorismatase hydrolase.
       0.768
Swit_0907
Hypothetical protein.
  
     0.761
Swit_3032
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.737
Swit_1596
Outer membrane receptor protein mostly Fe transport-like protein.
  
     0.714
Swit_3766
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.681
Swit_1191
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.653
Swit_1868
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.624
Swit_2291
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
   
 0.565
Swit_0540
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
   
 0.533
Swit_3144
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
 
  
 0.526
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.