Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_4161PFAM: FAD linked oxidase domain protein. (481 aa)    
Predicted Functional Partners:
Swit_4160
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I.
  
 
 0.684
Swit_4163
PFAM: Glutathione S-transferase, N-terminal domain.
  
  
 0.583
Swit_4165
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
  
    0.561
Swit_4162
Hypothetical protein.
  
  
 0.547
Swit_4164
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
       0.532
Swit_1474
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
   
 0.511
Swit_2988
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 0.511
Swit_1643
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.486
Swit_4230
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.486
Swit_4248
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
  
 0.486
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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