Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4185Hypothetical protein. (125 aa)    
Predicted Functional Partners:
Swit_4186
Hypothetical protein.
 
     0.946
Swit_4188
Rieske (2Fe-2S) domain protein; PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein.
 
     0.940
Swit_4189
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
     0.938
Swit_4184
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
     0.911
Swit_4190
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.
 
   
 0.887
Swit_4187
PFAM: Amidase; Belongs to the amidase family.
 
     0.814
Swit_0745
Hypothetical protein.
  
     0.774
Swit_0738
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
     0.773
Swit_0743
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
     0.773
Swit_4295
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
     0.773
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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