Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Swit_4191Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein, AraC type. (336 aa)    
Predicted Functional Partners:
Swit_4189
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit.
     
 0.553
Swit_4190
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR.
     
 0.547
Swit_4185
Hypothetical protein.
  
  
 0.544
Swit_4187
PFAM: Amidase; Belongs to the amidase family.
       0.524
Swit_4186
Hypothetical protein.
       0.523
Swit_4188
Rieske (2Fe-2S) domain protein; PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein.
       0.523
Swit_0747
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR.
  
  
 0.454
Swit_4184
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain.
     
 0.441
Swit_4557
Transcriptional regulator, AraC family; PFAM: Cupin 2, conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.419
Swit_0326
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix- domain containing protein, AraC type.
 
 
 0.416
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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