STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4229PFAM: alpha/beta hydrolase fold. (328 aa)    
Predicted Functional Partners:
Swit_4230
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
     
 0.690
Swit_3858
PFAM: alpha/beta hydrolase fold.
  
     0.630
Swit_1572
PFAM: alpha/beta hydrolase fold.
  
   
 0.603
Swit_2332
PFAM: heat shock protein DnaJ domain protein.
  
 
 0.603
Swit_2333
Transcriptional regulator BolA; PFAM: BolA family protein; Belongs to the BolA/IbaG family.
   
   0.580
Swit_4228
PFAM: short-chain dehydrogenase/reductase SDR.
  
   0.568
Swit_0892
Flavoprotein involved in K+ transport-like protein.
 
 
 0.558
Swit_4235
PFAM: alpha/beta hydrolase fold.
  
     0.552
Swit_0888
PFAM: alpha/beta hydrolase fold.
  
     0.550
Swit_4227
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase.
  
  
 0.546
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.