STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4241PFAM: luciferase family protein. (331 aa)    
Predicted Functional Partners:
Swit_4245
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR.
     
 0.783
Swit_4242
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase.
       0.780
Swit_4243
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
       0.780
Swit_4244
PFAM: peptidase S15.
       0.780
Swit_4246
PFAM: class II aldolase/adducin family protein.
       0.738
Swit_4238
PFAM: luciferase family protein.
 
   
0.534
Swit_4240
Hypothetical protein.
       0.532
Swit_4247
5-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.
       0.479
Swit_4248
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase.
       0.479
Swit_4249
PFAM: Antibiotic biosynthesis monooxygenase.
       0.479
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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