STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4243PFAM: General substrate transporter; major facilitator superfamily MFS_1. (455 aa)    
Predicted Functional Partners:
Swit_4241
PFAM: luciferase family protein.
     
 0.780
Swit_4244
PFAM: peptidase S15.
  
    0.779
Swit_4245
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR.
       0.778
Swit_3656
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
 
   
 0.777
Swit_4242
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase.
     
 0.776
Swit_4246
PFAM: class II aldolase/adducin family protein.
  
  
 0.744
Swit_3033
PFAM: major facilitator superfamily MFS_1.
 
  
 0.642
Swit_1885
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
 
   
 0.636
Swit_0383
PFAM: General substrate transporter; major facilitator superfamily MFS_1.
 
  
 0.611
Swit_4086
PFAM: major facilitator superfamily MFS_1.
  
     0.538
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.