Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4255SMART: Pyrrolo-quinoline quinone. (630 aa)    
Predicted Functional Partners:
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.840
bamD
DNA uptake lipoprotein-like protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.785
Swit_4256
PFAM: beta-lactamase domain protein.
       0.598
Swit_4257
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
     
 0.543
Swit_4254
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type.
       0.478
hisS
TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein.
 
    0.452
Swit_0853
PFAM: OmpA domain protein transmembrane region-containing protein; surface antigen msp4 family protein; OmpA/MotB domain protein.
  
 
 0.416
Swit_2278
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein.
  
 
 0.416
Swit_0410
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA N-terminal domain.
   
 
 0.401
Swit_2351
Hypothetical protein.
   
 
 0.401
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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