STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4256PFAM: beta-lactamase domain protein. (669 aa)    
Predicted Functional Partners:
Swit_4257
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug.
  
    0.698
Swit_4255
SMART: Pyrrolo-quinoline quinone.
       0.598
Swit_2518
PFAM: sulfatase.
   
 0.527
Swit_1858
PFAM: sulfatase.
   
 0.525
Swit_2516
PFAM: sulfatase.
   
 0.520
Swit_0381
PFAM: sulfatase.
   
 0.499
Swit_3043
PFAM: sulfatase.
   
 0.461
Swit_4258
Gentisate 1 2-dioxygenase-like protein.
       0.415
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.