Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swit_4263Gentisate 1 2-dioxygenase-like protein. (366 aa)    
Predicted Functional Partners:
Swit_4261
5-carboxymethyl-2-hydroxymuconate Delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.
     
 0.727
Swit_1994
Hypothetical protein.
  
     0.725
Swit_4262
PFAM: ornithine cyclodeaminase/mu-crystallin.
       0.717
Swit_2018
Hypothetical protein.
  
     0.708
Swit_4264
Hypothetical protein.
       0.701
Swit_2029
Hypothetical protein.
  
     0.682
Swit_2009
PFAM: Ethyl tert-butyl ether degradation EthD.
  
     0.668
Swit_2344
Hypothetical protein.
  
     0.668
Swit_1978
Hypothetical protein.
  
     0.635
Swit_2274
Uncharacterized protein.
  
     0.604
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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