Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swit_4284PFAM: malonate/sodium symporter MadM subunit. (254 aa)    
Predicted Functional Partners:
Swit_4285
PFAM: malonate transporter MadL subunit.
 
   
 0.961
Swit_4288
Acetyl-CoA carboxylase beta subunit-like protein.
 
   
 0.887
Swit_4286
Hypothetical protein.
 
     0.880
Swit_4287
PFAM: malonate decarboxylase delta subunit.
 
     0.872
Swit_4289
PFAM: malonate decarboxylase gamma subunit.
 
     0.857
Swit_4290
Hypothetical protein.
 
     0.847
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
     0.821
Swit_4283
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
 
     0.808
Swit_4292
(acyl-carrier-protein) S-malonyltransferase-like protein.
 
   
 0.700
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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