STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swit_4285PFAM: malonate transporter MadL subunit. (140 aa)    
Predicted Functional Partners:
Swit_4284
PFAM: malonate/sodium symporter MadM subunit.
 
   
 0.953
Swit_4287
PFAM: malonate decarboxylase delta subunit.
 
    0.931
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
    0.911
Swit_4286
Hypothetical protein.
 
  
 0.895
Swit_4288
Acetyl-CoA carboxylase beta subunit-like protein.
 
    0.887
Swit_4289
PFAM: malonate decarboxylase gamma subunit.
 
     0.860
Swit_4290
Hypothetical protein.
 
     0.841
Swit_4283
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein.
 
     0.811
Swit_4292
(acyl-carrier-protein) S-malonyltransferase-like protein.
 
  
 0.778
Swit_4185
Hypothetical protein.
  
     0.410
Your Current Organism:
Sphingomonas wittichii
NCBI taxonomy Id: 392499
Other names: S. wittichii RW1, Sphingomonas sp. RW1, Sphingomonas wittichii DSM 6014, Sphingomonas wittichii RW1, Sphingomonas wittichii str. RW1, Sphingomonas wittichii strain RW1
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